How to adjust the header and logo position.

The Atlas theme provides a unique homepage layout. If you wish to use a custom logo, which is bigger than the default size ( 212x39px ) you'll might have to re-align certain elements of the header and of the homepage. In order to do so please follow this tutorial. Open file style.css and search for the following code around line 609 (please note the actual code contains more line, the one we are interested in modifying is the padding property)

#navigation-wrapper ul li a {
padding: 33px 20px 30px 20px;
}

Modify the first and third padding values to re-align the navigation. Now, search for the following code around line 2209 (please note the actual code contains more lines, the one we are interested in modifying is the top property).

#home-sidebar {
top: -6px;
}

Modify the top value to re-align the homepage sidebar. You are done, you can save the file.